Update Background_Substraction.py

Background_Substraction.py

@@ -664,7 +664,9 @@ celltype_color_df = color_dict_to_df(celltype_color_dict, "cell_type")
 celltype_color_df.head()
 
 # Save to file in metadatadirectory
-filename = "celltype_color_data.csv"
+present_dir = os.path.dirname(os.path.realpath(__file__))
+filename = os.path.join(present_dir, "celltype_color_data.csv")
+#filename = "celltype_color_data.csv"
 filename = os.path.join(metadata_dir, filename)
 celltype_color_df.to_csv(filename, index = False)
 print("File" + filename + " was created!")