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Update Quality_Control.py
Browse files- Quality_Control.py +3 -19
Quality_Control.py
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@@ -14,6 +14,8 @@ import numpy as np
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import json
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import panel as pn
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import pandas as pd
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import random
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import asyncio
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import matplotlib.pyplot as plt
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@@ -178,13 +180,6 @@ print('metadata_images_dir :', metadata_images_dir)
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#ls_samples = [sample for sample in os.listdir(input_data_dir) if sample.endswith(".csv")]
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print("The following CSV files were detected:\n\n",[sample for sample in ls_samples], "\n\nin", input_data_dir, "directory.")
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# In[26]:
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import os
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import pandas as pd
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def combine_and_save_metadata_files(metadata_dir, selected_metadata_files):
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if len(selected_metadata_files) == []:
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if not file:
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@@ -253,9 +248,7 @@ print("df :\n", df.head(), "\n")
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print("df's columns :\n", df.columns, "\n")
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print("df's index :\n", df.index, "\n")
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print("df's index name :\n", df.index.name)
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df.head()
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# Verify that the ID column in input file became the index
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# Verify that the index name column is "ID", if not, rename it
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if df.index.name != "ID":
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@@ -283,12 +276,6 @@ print("\ndf :\n", df.head(), "\n")
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print("df's columns :\n", df.columns, "\n")
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print("df's index :\n", df.index, "\n")
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print("df's index name :\n", df.index.name)
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df.head()
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df.head()
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print("Used " + ls_samples[0] + " to determine the expected and corrected headers for all files.\n")
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print("These headers are: \n" + ", ".join([h for h in expected_headers]))
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@@ -1682,7 +1669,4 @@ app = pn.template.GoldenTemplate(
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),
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])
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app.servable()
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if __name__ == "__main__":
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pn.serve(app, port=5007)
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import json
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import panel as pn
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import pandas as pd
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import os
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import pandas as pd
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import random
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import asyncio
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import matplotlib.pyplot as plt
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#ls_samples = [sample for sample in os.listdir(input_data_dir) if sample.endswith(".csv")]
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print("The following CSV files were detected:\n\n",[sample for sample in ls_samples], "\n\nin", input_data_dir, "directory.")
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def combine_and_save_metadata_files(metadata_dir, selected_metadata_files):
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if len(selected_metadata_files) == []:
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if not file:
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print("df's columns :\n", df.columns, "\n")
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print("df's index :\n", df.index, "\n")
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print("df's index name :\n", df.index.name)
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df.head()
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# Verify that the ID column in input file became the index
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# Verify that the index name column is "ID", if not, rename it
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if df.index.name != "ID":
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print("df's columns :\n", df.columns, "\n")
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print("df's index :\n", df.index, "\n")
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print("df's index name :\n", df.index.name)
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print("Used " + ls_samples[0] + " to determine the expected and corrected headers for all files.\n")
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print("These headers are: \n" + ", ".join([h for h in expected_headers]))
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),
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])
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app.servable()
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