Update Background_Substraction.py

Background_Substraction.py

@@ -45,7 +45,7 @@ warnings.filterwarnings('ignore', category= UserWarning)
 ###############################
 
 ##### LOCAL WORKSTATION #####
-input_path = '/Users/harshithakolipaka/Downloads/wetransfer_data-zip_2024-05-17_1431/'
+#input_path = '/Users/harshithakolipaka/Downloads/wetransfer_data-zip_2024-05-17_1431/'
 #############################
 
 #set_name = 'Set_A'
@@ -55,7 +55,7 @@ input_path = '/Users/harshithakolipaka/Downloads/wetransfer_data-zip_2024-05-17_
 #present_dir = os.path.dirname(os.path.realpath(__file__))
 
 #input_path = os.path.join(present_dir, 'wetransfer_data-zip_2024-05-17_1431')
-base_dir = input_path
+#base_dir = input_path
 '''
 # Function to change permissions recursively with error handling
 def change_permissions_recursive(path, mode):
@@ -75,6 +75,8 @@ def change_permissions_recursive(path, mode):
 change_permissions_recursive(base_dir, 0o777)
 change_permissions_recursive('/code', 0o777)
 '''
+
+base_dir = '/code/wetransfer_data-zip_2024-05-17_1431'
 set_path = 'test'
 selected_metadata_files = ['Slide_B_DD1s1.one_1.tif.csv', 'Slide_B_DD1s1.one_2.tif.csv']
 ls_samples = ['Ashlar_Exposure_Time.csv', 'new_data.csv', 'DD3S1.csv', 'DD3S2.csv', 'DD3S3.csv', 'TMA.csv']