Update README.md

README.md

@@ -6,11 +6,9 @@ license: cc-by-nc-nd-4.0
 
 A PTM-Aware Protein Language Model with Bidirectional Gated Mamba Blocks
 
-[[Huggingface](https://huggingface.co/ChatterjeeLab/PTM-Mamba)]    [[Github](https://github.com/programmablebio/ptm-mamba)]   [[Paper](https://www.biorxiv.org/content/10.1101/2024.02.28.581983v1)]
+[[HuggingFace](https://huggingface.co/ChatterjeeLab/PTM-Mamba)]    [[GitHub](https://github.com/programmablebio/ptm-mamba)]   [[Paper](https://www.nature.com/articles/s41592-025-02656-9)]
 
-<img src="https://cdn-uploads.huggingface.co/production/uploads/6430c79620265810703d3986/7QdA6MZ6OTmNHuwyDqFnN.png" width="300" height="300">
-
->  Figure generated by Dalle-3 with prompt "A PTM-Aware Protein Language Model with Bidirectional Gated Mamba Blocks".
+![image/jpeg](https://cdn-uploads.huggingface.co/production/uploads/64cd5b3f0494187a9e8b7c69/YkefDfOrSBFhCgfsxKk7s.jpeg)
 
 ## Install Enviroment
 
@@ -113,16 +111,15 @@ This project is based on the  following codebase. Please give them a star if you
 ## Citation
 Please cite our paper if you enjoy our code :)
 ```
-@article {Peng2024.02.28.581983,
-	author = {Zhangzhi Peng and Benjamin Schussheim and Pranam Chatterjee},
-	title = {PTM-Mamba: A PTM-Aware Protein Language Model with Bidirectional Gated Mamba Blocks},
-	elocation-id = {2024.02.28.581983},
-	year = {2024},
-	doi = {10.1101/2024.02.28.581983},
-	publisher = {Cold Spring Harbor Laboratory},
-	URL = {https://www.biorxiv.org/content/early/2024/02/29/2024.02.28.581983},
-	eprint = {https://www.biorxiv.org/content/early/2024/02/29/2024.02.28.581983.full.pdf},
-	journal = {bioRxiv}
+
+@article {Peng2025,
+	author={Peng, Fred Zhangzhi and Wang, Chentong and Chen, Tong and Schussheim, Benjamin and Vincoff, Sophia and Chatterjee, Pranam},
+	title={PTM-Mamba: a PTM-aware protein language model with bidirectional gated Mamba blocks},
+	journal={Nature Methods},
+	year={2025},
+	issn={1548-7105},
+	doi={10.1038/s41592-025-02656-9},
+	url={https://doi.org/10.1038/s41592-025-02656-9}
 }
 
 ```